Index A | B | C | D | E | F | G | H | I | K | L | M | N | O | P | R | S | T | U | V | W | X | Y | Z A Adaptive (class in susan.project.Schedulers.AngularSearch) (class in susan.project.Schedulers.Bandpass) ali_cc (susan.data.Particles attribute) ali_eu (susan.data.Particles attribute) ali_t (susan.data.Particles attribute) ali_w (susan.data.Particles attribute) align() (susan.modules.Aligner method) align_mpi() (susan.modules.Aligner method) Aligner (class in susan.modules) aligner (susan.project.STA.STA attribute) (susan.project.SubtomoAvg.SubtomoAvg attribute) allow_drift (susan.modules.Aligner attribute) Alternating (class in susan.project.Schedulers.IterationType) AlternatingConeInplane (class in susan.project.Schedulers.AngularSearch) amp_cont (susan.data.Tomograms attribute) angle_sigma (susan.modules.Aligner attribute) angles (susan.modules.CtfRefiner attribute) angular_search_scheduler (susan.project.SubtomoAvgSched.SubtomoAvgSched attribute) angular_step_from_fsc() (in module susan.utils._functions) append_ptcls() (susan.data.Particles method) apply_FOM() (in module susan.utils._functions) apply_mask (susan.ml.VolumePairs attribute) apply_spectral_weight() (in module susan.utils._functions) arg (susan.utils.datatypes.mpi_params attribute) Averager (class in susan.modules) averager (susan.project.STA.STA attribute) (susan.project.SubtomoAvg.SubtomoAvg attribute) B bandpass (class in susan.utils.datatypes) (susan.modules.Aligner attribute) (susan.modules.Averager attribute) (susan.modules.CtfRefiner attribute) (susan.modules.SubtomoRec attribute) bandpass() (in module susan.utils._functions) bandpass_scheduler (susan.project.SubtomoAvgSched.SubtomoAvgSched attribute) bandpass_shell_sweep() (in module susan.project.diagnostics) bin_frame() (in module susan.utils._functions) bin_frame_shape() (in module susan.utils._functions) bin_vol() (in module susan.utils._functions) boost_lowfreq (susan.modules.Averager attribute) (susan.modules.SubtomoRec attribute) boost_lowfreq_params (class in susan.utils.datatypes) box_size (susan.ml.VolumePairs attribute) (susan.project.STA.STA attribute) (susan.project.SubtomoAvg.SubtomoAvg attribute) buffer (susan.ml.VolumePairs attribute) C cc_stats_type (susan.modules.Aligner attribute) cc_threshold (susan.project.STA.STA attribute) (susan.project.SubtomoAvg.SubtomoAvg attribute) cc_type (susan.modules.Aligner attribute) (susan.modules.CtfRefiner attribute) cmd (susan.utils.datatypes.mpi_params attribute) cone (susan.modules.Aligner attribute) ConeOnly (class in susan.project.Schedulers.AngularSearch) configure_dynamo() (susan.project.Extractor.SubtomogramGenerator method) configure_relion() (susan.project.Extractor.SubtomogramGenerator method) create_sphere() (in module susan.utils._functions) create_training_dataset() (susan.project.SubtomoAvgN2N.SubtomoAvgN2N method) crop_projections() (susan.project.Extractor.ProjectionExtractor method) crop_vol() (susan.ml.VolumePairs method) CropProjection (class in susan.modules) cross_halfmaps (susan.project.SubtomoAvg.SubtomoAvg attribute) ctf_correction (susan.modules.Aligner attribute) (susan.modules.Averager attribute) (susan.modules.SubtomoRec attribute) ctf_refiner (susan.project.STA.STA attribute) (susan.project.SubtomoAvg.SubtomoAvg attribute) ctf_scale_factor (susan.data.Tomograms attribute) ctf_tps_lambda (susan.project.STA.STA attribute) (susan.project.SubtomoAvg.SubtomoAvg attribute) CtfEstimator (class in susan.modules) CtfRefiner (class in susan.modules) Cyclic (class in susan.project.Schedulers.IterationType) D decay (susan.utils.datatypes.boost_lowfreq_params attribute) dechirp_cs (susan.modules.CtfEstimator attribute) def_ang (susan.data.Particles attribute) (susan.data.Tomograms attribute) def_Bfct (susan.data.Particles attribute) (susan.data.Tomograms attribute) def_ExFl (susan.data.Particles attribute) (susan.data.Tomograms attribute) def_mres (susan.data.Particles attribute) (susan.data.Tomograms attribute) def_phas (susan.data.Particles attribute) (susan.data.Tomograms attribute) def_scor (susan.data.Particles attribute) (susan.data.Tomograms attribute) defocus_angstroms (susan.modules.CtfEstimator attribute) (susan.modules.CtfRefiner attribute) defocus_sigma (susan.modules.CtfRefiner attribute) denoise() (susan.ml.Noise2NoiseTrainer method) dilate (susan.modules.Aligner attribute) dimensionality (susan.modules.Aligner attribute) discard_closer() (susan.data._PtclsGeom.PtclsGeom static method) discard_oversampled_views (susan.project.SubtomoAvg.SubtomoAvg attribute) dose_from_fsc() (in module susan.utils._functions) doses (susan.data.Tomograms attribute) duplicate() (susan.data._PtclsMRA.PtclsMRA static method) E enable_by_tilt() (susan.data._PtclsGeom.PtclsGeom static method) enable_by_tilt_range() (susan.data._PtclsGeom.PtclsGeom static method) est_initial_snr (susan.modules.CtfEstimator attribute) est_phase_shift (susan.modules.CtfEstimator attribute) estimate() (susan.modules.CtfEstimator method) estimate_delta_2D_angle() (in module susan.project.diagnostics) estimate_delta_2D_offset() (in module susan.project.diagnostics) estimate_delta_2D_total_angle() (in module susan.project.diagnostics) estimate_delta_3D_angle() (in module susan.project.diagnostics) estimate_delta_3D_offset() (in module susan.project.diagnostics) estimate_delta_3D_total_angle() (in module susan.project.diagnostics) estimate_delta_defocus() (in module susan.project.diagnostics) estimate_sigma_2D_angle() (in module susan.project.diagnostics) estimate_sigma_2D_offset() (in module susan.project.diagnostics) estimate_sigma_2D_total_angle() (in module susan.project.diagnostics) estimate_sigma_3D_angle() (in module susan.project.diagnostics) estimate_sigma_3D_offset() (in module susan.project.diagnostics) estimate_sigma_3D_total_angle() (in module susan.project.diagnostics) estimate_sigma_defocus() (in module susan.project.diagnostics) exec_averaging() (susan.project.STA.STA method) exec_estimation() (susan.project.STA.STA method) exec_particle_selection() (susan.project.STA.STA method) exec_postprocessing() (susan.project.STA.STA method) execute_iteration() (susan.project.STA.STA method) (susan.project.SubtomoAvg.SubtomoAvg method) expand_by_rot_shift() (susan.data._PtclsGeom.PtclsGeom static method) expfilt_gain (susan.modules.Aligner attribute) export_positions() (susan.data.Particles method) extra_padding (susan.modules.Aligner attribute) (susan.modules.Averager attribute) (susan.modules.CtfRefiner attribute) (susan.modules.SubtomoRec attribute) extract() (susan.modules.CropProjection method) F F (susan.utils.datatypes.ssnr attribute) factor (susan.utils.datatypes.refine_params attribute) fitting_from_origin (susan.project.STA.STA attribute) (susan.project.SubtomoAvg.SubtomoAvg attribute) Fixed (class in susan.project.Schedulers.AngularSearch) (class in susan.project.Schedulers.Bandpass) (class in susan.project.Schedulers.IterationType) force_extension() (in module susan.utils._functions) format (susan.modules.SubtomoRec attribute) forward() (susan.ml.Noise2Noise method) fpix (susan.utils.datatypes.fsc_info attribute) fsc_analyse() (in module susan.utils._functions) fsc_get() (in module susan.utils._functions) fsc_get_fpix() (in module susan.utils._functions) fsc_info (class in susan.utils.datatypes) fsc_sharpen() (in module susan.utils._functions) fsc_sharpen_filter() (in module susan.utils._functions) fsc_threshold (susan.project.STA.STA attribute) (susan.project.SubtomoAvg.SubtomoAvg attribute) G gen_cmd() (susan.utils.datatypes.mpi_params method) generate_subtomos() (susan.project.Extractor.SubtomogramGenerator method) get_args() (susan.modules.Aligner method) (susan.modules.Averager method) (susan.modules.CropProjection method) (susan.modules.CtfEstimator method) (susan.modules.CtfRefiner method) (susan.modules.SubtomoRec method) get_cc() (susan.project.STA.STA method) (susan.project.SubtomoAvg.SubtomoAvg method) (susan.project.SubtomoAvg.SubtomoAvgBase method) (susan.project.SubtomoAvg.SubtomoAvgMonitor method) get_extension() (in module susan.utils._functions) get_fsc() (susan.project.STA.STA method) (susan.project.SubtomoAvg.SubtomoAvg method) (susan.project.SubtomoAvg.SubtomoAvgBase method) (susan.project.SubtomoAvg.SubtomoAvgMonitor method) get_info() (in module susan.io.mrc) get_iteration_dir() (susan.project.STA.STA method) get_iteration_files() (susan.project.STA.STA method) get_map() (susan.project.STA.STA method) (susan.project.SubtomoAvg.SubtomoAvg method) (susan.project.SubtomoAvg.SubtomoAvgBase method) (susan.project.SubtomoAvg.SubtomoAvgMonitor method) get_mask() (susan.project.SubtomoAvg.SubtomoAvgBase method) (susan.project.SubtomoAvg.SubtomoAvgMonitor method) get_min_distance() (susan.data._PtclsGeom.PtclsGeom static method) get_name_ptcls() (susan.project.STA.STA method) get_name_refstxt() (susan.project.STA.STA method) get_names_halfmaps() (susan.project.STA.STA method) get_names_map() (susan.project.STA.STA method) get_names_mask() (susan.project.STA.STA method) get_ptcls() (susan.project.STA.STA method) (susan.project.SubtomoAvg.SubtomoAvg method) (susan.project.SubtomoAvg.SubtomoAvgBase method) (susan.project.SubtomoAvg.SubtomoAvgMonitor method) global_grid (susan.project.SubtomoAvg.SubtomoAvg attribute) global_lambda (susan.project.SubtomoAvg.SubtomoAvg attribute) grid_2d() (susan.data.Particles static method) grid_3d() (susan.data.Particles static method) gridding_type (susan.modules.Averager attribute) H h1 (susan.data.Reference attribute) h2 (susan.data.Reference attribute) half_id (susan.data.Particles attribute) halfsets_by_Y() (susan.data.Particles method) halfsets_even_odd() (susan.data.Particles method) halfsets_independ (susan.modules.Aligner attribute) (susan.modules.CtfRefiner attribute) halfsets_randomize() (susan.data.Particles method) handedness (susan.data.Tomograms attribute) highpass (susan.utils.datatypes.bandpass attribute) I ignore_classes (susan.modules.Aligner attribute) (susan.modules.Averager attribute) image_grid (susan.project.SubtomoAvg.SubtomoAvg attribute) image_lambda (susan.project.SubtomoAvg.SubtomoAvg attribute) image_orthogonalize (susan.project.SubtomoAvg.SubtomoAvg attribute) import_data() (susan.data.Particles static method) init_with_halfmaps() (susan.ml.VolumePairs method) initial_particles (susan.project.STA.STA attribute) (susan.project.SubtomoAvg.SubtomoAvg attribute) initial_reference (susan.project.STA.STA attribute) (susan.project.SubtomoAvg.SubtomoAvg attribute) inplane (susan.modules.Aligner attribute) InplaneOnly (class in susan.project.Schedulers.AngularSearch) input_device() (susan.ml.Noise2Noise method) inversion (susan.modules.Averager attribute) (susan.modules.SubtomoRec attribute) inversion_params (class in susan.utils.datatypes) invert_contrast (susan.modules.CropProjection attribute) (susan.modules.SubtomoRec attribute) is_even() (in module susan.utils._functions) is_extension() (in module susan.utils._functions) is_odd() (in module susan.utils._functions) ite (susan.utils.datatypes.inversion_params attribute) iteration_dir() (susan.project.SubtomoAvg.SubtomoAvg method) (susan.project.SubtomoAvg.SubtomoAvgBase method) (susan.project.SubtomoAvg.SubtomoAvgMonitor method) iteration_files() (susan.project.SubtomoAvg.SubtomoAvg method) (susan.project.SubtomoAvg.SubtomoAvgBase method) (susan.project.SubtomoAvg.SubtomoAvgMonitor method) iteration_type (susan.project.STA.STA attribute) (susan.project.SubtomoAvg.SubtomoAvg attribute) iteration_type_scheduler (susan.project.SubtomoAvgSched.SubtomoAvgSched attribute) K kept_count (susan.data.TiltRangeSelector property) kept_indices (susan.data.TiltRangeSelector property) kind (susan.utils.datatypes.offset_params attribute) L levels (susan.utils.datatypes.refine_params attribute) list_gpus_ids (susan.modules.Aligner attribute) (susan.modules.Averager attribute) (susan.modules.CtfEstimator attribute) (susan.modules.CtfRefiner attribute) (susan.modules.SubtomoRec attribute) (susan.project.Extractor.SubtomogramGenerator attribute) (susan.project.STA.STA attribute) (susan.project.SubtomoAvg.SubtomoAvg attribute) load() (susan.data.Reference static method) (susan.ml.Noise2Noise class method) load_state() (susan.ml.Noise2NoiseTrainer method) log_level (susan.modules.CtfEstimator attribute) lowpass (susan.utils.datatypes.bandpass attribute) M mace_step() (susan.ml.Noise2NoiseTrainer method) make_2d_refinement() (susan.project.SubtomoAvgSched.SubtomoAvgSched class method) make_3d_refinement() (susan.project.SubtomoAvgSched.SubtomoAvgSched class method) make_mixed_ctf_2d() (susan.project.SubtomoAvgSched.SubtomoAvgSched class method) map_change() (susan.project.SubtomoAvg.SubtomoAvg method) (susan.project.SubtomoAvg.SubtomoAvgBase method) (susan.project.SubtomoAvg.SubtomoAvgMonitor method) map_filter (susan.project.SubtomoAvg.SubtomoAvg attribute) map_filter_fsc (susan.project.SubtomoAvg.SubtomoAvg attribute) mask (susan.ml.VolumePairs attribute) mask_diameter() (in module susan.utils._functions) max_2d_delta_angstroms (susan.project.STA.STA attribute) (susan.project.SubtomoAvg.SubtomoAvg attribute) max_tilt_reconstruction (susan.project.STA.STA attribute) (susan.project.SubtomoAvg.SubtomoAvg attribute) max_val (susan.utils.datatypes.range_params attribute) max_vol (susan.ml.VolumePairs attribute) min_mask_value (susan.ml.VolumePairs attribute) min_val (susan.utils.datatypes.range_params attribute) module susan.io.em susan.io.mrc susan.io.tlt susan.io.xf susan.project.diagnostics susan.utils._functions mpi (susan.modules.Aligner attribute) (susan.modules.Averager attribute) (susan.modules.CtfRefiner attribute) (susan.project.STA.STA attribute) (susan.project.SubtomoAvg.SubtomoAvg attribute) mpi_params (class in susan.utils.datatypes) msk (susan.data.Reference attribute) N n2n_batch_size (susan.project.SubtomoAvgN2N.SubtomoAvgN2N attribute) n2n_extra_pad (susan.project.SubtomoAvgN2N.SubtomoAvgN2N attribute) n2n_free_gpu (susan.project.SubtomoAvgN2N.SubtomoAvgN2N attribute) n2n_mask (susan.project.SubtomoAvgN2N.SubtomoAvgN2N attribute) n2n_num_entries (susan.project.SubtomoAvgN2N.SubtomoAvgN2N attribute) n2n_print_every (susan.project.SubtomoAvgN2N.SubtomoAvgN2N attribute) n2n_ptcls_modifier (susan.project.SubtomoAvgN2N.SubtomoAvgN2N attribute) n_parameters() (susan.ml.Noise2Noise method) n_proj (susan.data.Particles property) n_projs (susan.data.Tomograms property) n_ptcl (susan.data.Particles property) n_refs (susan.data.Particles property) (susan.data.Reference property) n_tomos (susan.data.Tomograms property) new_n_projs (susan.data.TiltRangeSelector attribute) Noise2Noise (class in susan.ml) Noise2NoiseTrainer (class in susan.ml) nominal_tilt_angles (susan.data.Tomograms attribute) normalize_output (susan.modules.Averager attribute) (susan.modules.SubtomoRec attribute) normalize_type (susan.modules.Aligner attribute) (susan.modules.Averager attribute) (susan.modules.CropProjection attribute) (susan.modules.CtfRefiner attribute) (susan.modules.SubtomoRec attribute) num_proj (susan.data.Tomograms attribute) num_threads (susan.modules.CropProjection attribute) num_vol (susan.ml.VolumePairs attribute) O offset (susan.modules.Aligner attribute) (susan.modules.CtfRefiner attribute) offset_params (class in susan.utils.datatypes) offset_sigma (susan.modules.Aligner attribute) (susan.modules.CtfRefiner attribute) offset_space (susan.modules.Aligner attribute) output_device() (susan.ml.Noise2Noise method) overfocus (susan.modules.CtfEstimator attribute) P pad_vol() (susan.ml.VolumePairs method) padding_type (susan.modules.Aligner attribute) (susan.modules.Averager attribute) (susan.modules.CtfRefiner attribute) (susan.modules.SubtomoRec attribute) Particles (class in susan.data) path_halfmap() (susan.project.SubtomoAvg.SubtomoAvg method) (susan.project.SubtomoAvg.SubtomoAvgBase method) (susan.project.SubtomoAvg.SubtomoAvgMonitor method) path_map() (susan.project.SubtomoAvg.SubtomoAvg method) (susan.project.SubtomoAvg.SubtomoAvgBase method) (susan.project.SubtomoAvg.SubtomoAvgMonitor method) path_map_rec() (susan.project.SubtomoAvg.SubtomoAvg method) (susan.project.SubtomoAvg.SubtomoAvgBase method) (susan.project.SubtomoAvg.SubtomoAvgMonitor method) path_mask() (susan.project.SubtomoAvg.SubtomoAvg method) (susan.project.SubtomoAvg.SubtomoAvgBase method) (susan.project.SubtomoAvg.SubtomoAvgMonitor method) path_ptcls() (susan.project.SubtomoAvg.SubtomoAvg method) (susan.project.SubtomoAvg.SubtomoAvgBase method) (susan.project.SubtomoAvg.SubtomoAvgMonitor method) path_refstxt() (susan.project.SubtomoAvg.SubtomoAvg method) (susan.project.SubtomoAvg.SubtomoAvgBase method) (susan.project.SubtomoAvg.SubtomoAvgMonitor method) phase_flip (susan.modules.CtfRefiner attribute) phase_randomize() (in module susan.utils._functions) phase_shift_deg (susan.modules.CtfRefiner attribute) phase_sigma_deg (susan.modules.CtfRefiner attribute) pix_size (susan.data.Tomograms attribute) populate() (susan.ml.VolumePairs method) pos() (susan.data.Particles method) position (susan.data.Particles attribute) predict() (susan.ml.Noise2NoiseTrainer method) prj_cc (susan.data.Particles attribute) prj_eu (susan.data.Particles attribute) prj_name (susan.project.STA.STA attribute) (susan.project.SubtomoAvg.SubtomoAvg attribute) prj_t (susan.data.Particles attribute) prj_w (susan.data.Particles attribute) proj_cropper (susan.project.Extractor.ProjectionExtractor attribute) proj_eZYZ (susan.data.Tomograms attribute) proj_shift (susan.data.Tomograms attribute) proj_wgt (susan.data.Tomograms attribute) ProjectionExtractor (class in susan.project.Extractor) pseudo_symmetry (susan.modules.Aligner attribute) ptcl_id (susan.data.Particles attribute) PtclsGeom (class in susan.data._PtclsGeom) PtclsMRA (class in susan.data._PtclsMRA) R radial_average() (in module susan.utils._functions) Ramp (class in susan.project.Schedulers.Bandpass) range_params (class in susan.utils.datatypes) read() (in module susan) (in module susan.io.em) (in module susan.io.mrc) (in module susan.io.tlt) (in module susan.io.xf) rec_halfsets (susan.modules.Averager attribute) reconstruct() (susan.modules.Averager method) (susan.modules.SubtomoRec method) reconstruct_mpi() (susan.modules.Averager method) ref (susan.data.Reference attribute) ref_cix (susan.data.Particles attribute) Reference (class in susan.data) refine (susan.modules.Aligner attribute) refine() (susan.modules.CtfRefiner method) refine_astigmatism (susan.modules.CtfRefiner attribute) refine_mpi() (susan.modules.CtfRefiner method) refine_params (class in susan.utils.datatypes) relion_ctf (susan.modules.SubtomoRec attribute) res (susan.utils.datatypes.fsc_info attribute) reset() (susan.ml.VolumePairs method) (susan.project.Schedulers.AngularSearch.AlternatingConeInplane method) (susan.project.Schedulers.IterationType.Alternating method) (susan.project.Schedulers.IterationType.Cyclic method) reset_weights() (susan.ml.Noise2Noise method) resolution_max (susan.modules.CtfEstimator attribute) resolution_thres (susan.modules.CtfEstimator attribute) reweight_classification (susan.project.STA.STA attribute) (susan.project.SubtomoAvg.SubtomoAvg attribute) rho_v (susan.project.SubtomoAvg.SubtomoAvg attribute) rolloff (susan.utils.datatypes.bandpass attribute) rot_shift() (susan.data._PtclsGeom.PtclsGeom static method) run() (susan.project.SubtomoAvgSched.SubtomoAvgSched method) run_estimation() (susan.project.SubtomoAvg.SubtomoAvg method) (susan.project.SubtomoAvg.SubtomoAvgCore method) run_iteration() (susan.project.SubtomoAvg.SubtomoAvg method) (susan.project.SubtomoAvg.SubtomoAvgCore method) run_postprocessing() (susan.project.SubtomoAvg.SubtomoAvg method) (susan.project.SubtomoAvg.SubtomoAvgCore method) run_reconstruction() (susan.project.SubtomoAvg.SubtomoAvg method) (susan.project.SubtomoAvg.SubtomoAvgCore method) S S (susan.utils.datatypes.ssnr attribute) save() (susan.data.Particles method) (susan.data.Reference method) (susan.data.Tomograms method) (susan.ml.Noise2Noise method) (susan.ml.Noise2NoiseTrainer method) save_raw_map (susan.project.SubtomoAvg.SubtomoAvg attribute) scale (susan.utils.datatypes.boost_lowfreq_params attribute) search_params (class in susan.utils.datatypes) select() (susan.data.Particles method) select_particles() (susan.project.SubtomoAvg.SubtomoAvg method) (susan.project.SubtomoAvg.SubtomoAvgCore method) select_ref() (susan.data._PtclsMRA.PtclsMRA static method) set_angles() (susan.data.Tomograms method) set_angular_search() (susan.modules.Aligner method) set_defocus() (susan.data.Tomograms method) set_offset_search() (susan.modules.Aligner method) (susan.modules.CtfRefiner method) set_size() (susan.ml.VolumePairs method) set_size_mask() (susan.ml.VolumePairs method) set_stack() (susan.data.Tomograms method) set_weights() (susan.data.Particles method) setup_iteration() (susan.project.STA.STA method) (susan.project.SubtomoAvg.SubtomoAvg method) (susan.project.SubtomoAvg.SubtomoAvgCore method) smooth_ctf (susan.project.STA.STA attribute) (susan.project.SubtomoAvg.SubtomoAvg attribute) sort() (susan.data.Particles method) span (susan.utils.datatypes.offset_params attribute) (susan.utils.datatypes.search_params attribute) spectral_weight_CFSC() (in module susan.utils._functions) sph_aber (susan.data.Tomograms attribute) splat_gain (susan.modules.Averager attribute) ssnr (class in susan.utils.datatypes) (susan.modules.Aligner attribute) (susan.modules.Averager attribute) (susan.modules.CtfRefiner attribute) (susan.modules.SubtomoRec attribute) ssnr_from_fsc() (in module susan.utils._functions) STA (class in susan.project.STA) stack_file (susan.data.Tomograms attribute) stack_size (susan.data.Tomograms attribute) std (susan.utils.datatypes.inversion_params attribute) step (susan.utils.datatypes.offset_params attribute) (susan.utils.datatypes.search_params attribute) subtomo_rec (susan.project.Extractor.SubtomogramGenerator attribute) SubtomoAvg (class in susan.project.SubtomoAvg) SubtomoAvgBase (class in susan.project.SubtomoAvg) SubtomoAvgCore (class in susan.project.SubtomoAvg) SubtomoAvgMonitor (class in susan.project.SubtomoAvg) SubtomoAvgN2N (class in susan.project.SubtomoAvgN2N) SubtomoAvgSched (class in susan.project.SubtomoAvgSched) SubtomogramGenerator (class in susan.project.Extractor) SubtomoRec (class in susan.modules) susan.io.em module susan.io.mrc module susan.io.tlt module susan.io.xf module susan.project.diagnostics module susan.utils._functions module symmetry (susan.modules.Averager attribute) T tag (susan.data.TiltRangeSelector attribute) tilt_deg_max (susan.data.TiltRangeSelector attribute) tilt_deg_min (susan.data.TiltRangeSelector attribute) TiltRangeSelector (class in susan.data) time_now() (in module susan.utils._functions) tm_prefix (susan.modules.Aligner attribute) tm_sigma (susan.modules.Aligner attribute) tm_type (susan.modules.Aligner attribute) tmp_base (susan.ml.VolumePairs attribute) to_particles() (susan.data.TiltRangeSelector method) to_tomograms() (susan.data.TiltRangeSelector method) tomo_cix (susan.data.Particles attribute) tomo_id (susan.data.Particles attribute) (susan.data.Tomograms attribute) tomo_position (susan.data.Tomograms attribute) tomo_size (susan.data.Tomograms attribute) tomogram_file (susan.project.STA.STA attribute) (susan.project.SubtomoAvg.SubtomoAvg attribute) Tomograms (class in susan.data) tps_lambda (susan.project.STA.STA attribute) (susan.project.SubtomoAvg.SubtomoAvg attribute) train() (susan.ml.Noise2NoiseTrainer method) train_and_denoise() (susan.project.SubtomoAvgN2N.SubtomoAvgN2N method) type_2d_shift_fitting (susan.project.STA.STA attribute) (susan.project.SubtomoAvg.SubtomoAvg attribute) type_ctf_smoothing (susan.project.STA.STA attribute) (susan.project.SubtomoAvg.SubtomoAvg attribute) U update_defocus() (susan.data.Particles method) update_position() (susan.data.Particles method) use_align (susan.modules.SubtomoRec attribute) use_nominal (susan.project.SubtomoAvg.SubtomoAvg attribute) V value (susan.utils.datatypes.boost_lowfreq_params attribute) verbosity (susan.modules.Aligner attribute) (susan.modules.Averager attribute) (susan.modules.CtfEstimator attribute) (susan.modules.CtfRefiner attribute) (susan.modules.SubtomoRec attribute) (susan.project.STA.STA attribute) (susan.project.SubtomoAvg.SubtomoAvg attribute) voltage (susan.data.Tomograms attribute) VolumePairs (class in susan.ml) W weighting_type (susan.modules.Averager attribute) write() (in module susan.io.mrc) X x() (susan.data.Particles method) Y y() (susan.data.Particles method) Z z() (susan.data.Particles method)